CEPS  24.01
Cardiac ElectroPhysiology Simulator
FEDivKGradAssembler.hpp
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1 /*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2  This file is part of CEPS.
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4  CEPS is free software: you can redistribute it and/or modify
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16  If not, see <https://www.gnu.org/licenses/>.
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19  Copyright 2019-2024 Inria, Universite de Bordeaux
20 
21  Authors, in alphabetical order:
22 
23  Pierre-Elliott BECUE, Florian CARO, Yves COUDIERE(*), Andjela DAVIDOVIC,
24  Charlie DOUANLA-LONTSI, Marc FUENTES, Mehdi JUHOOR, Michael LEGUEBE(*),
25  Pauline MIGERDITICHAN, Valentin PANNETIER(*), Nejib ZEMZEMI.
26  * : currently active authors
27 
28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~*/
30 #pragma once
31 
34 
42 {
43 
44  public:
45 
48 
50  explicit FEDivKGradAssembler(
51  FiniteElements* fe,
52  CepsBool isBoundary = false,
53  const CepsSet<CepsAttribute>& attributes = {CepsUniversal},
54  const CepsVector<Unknown*>& unknowns = {}
55  );
56 
58  virtual
60 
62  void
64 
66  void
68 
70  void
72 
74  void
76 
78  CepsBool
79  isChangingBetweenTimes(CepsReal t1, CepsReal t2) const override;
80 
81  protected:
82 
86  const CepsVector<Unknown*>& us,
87  FEBase* elem,
88  CepsReal3D x,
89  CepsReal t
90  ) const;
91 
101  void
103  FEBase* element,
104  CepsReal3D xQ,
105  CepsReal t,
106  const CepsMathDynamic1D& phi,
107  const CepsMathDynamic2D& gradPhi
108  ) override;
109 
110 
111 
112  protected:
118 };
119 
Eigen::Matrix< CepsScalar, Eigen::Dynamic, 1 > CepsMathDynamic1D
Dynamic 1D array, eigen format.
Definition: CepsTypes.hpp:139
CepsScalar CepsMathScalar
Real numbers.
Definition: CepsTypes.hpp:133
std::map< _Key, _Tp, _Compare, _Alloc > CepsMap
C++ map.
Definition: CepsTypes.hpp:196
std::set< _Type, _Compare, _Alloc > CepsSet
C++ set.
Definition: CepsTypes.hpp:209
Eigen::Matrix< CepsScalar, 3, 3 > CepsMathTensor
Tensor, eigen format.
Definition: CepsTypes.hpp:137
std::vector< _Type, _Alloc > CepsVector
C++ vector.
Definition: CepsTypes.hpp:155
bool CepsBool
Booleans.
Definition: CepsTypes.hpp:124
float CepsReal
Need single precision floating point.
Definition: CepsTypes.hpp:100
CepsArray3< CepsReal > CepsReal3D
Three real scalars, used like this for compatibility in polynomials.
Definition: CepsTypes.hpp:178
constexpr CepsAttribute CepsUniversal
This attribute means "everywhere".
Definition: CepsTypes.hpp:232
Eigen::Matrix< CepsScalar, Eigen::Dynamic, Eigen::Dynamic > CepsMathDynamic2D
Dynamic 2D array, eigen format.
Definition: CepsTypes.hpp:140
A base class made for Finite Element assembler.
Definition: FEAssembler.hpp:42
Abstract class for finite elements.
Definition: FEBase.hpp:65
Assembles the stiffness matrix for a given k-simplexes geometry.
void computeBlocksOnElementAtQuadPoint(FEBase *element, CepsReal3D xQ, CepsReal t, const CepsMathDynamic1D &phi, const CepsMathDynamic2D &gradPhi) override
The function that is called to get the coefficients of the submatrix on a given finite element....
CepsMap< CepsUnknownIndex, CepsMathTensor > m_cstTensors
Diffusion coefficient.
CepsMap< CepsUnknownIndex, CepsMathScalar > m_cstScalars
Diffusion coefficient.
CepsBool m_isTimeDependant
Enforce time dependencie.
CepsBool isChangingBetweenTimes(CepsReal t1, CepsReal t2) const override
Tells if this assembler changes between the two times.
CepsMap< CepsUnknownIndex, SAFunc< CepsMathScalar > * > m_fctScalars
Diffusion coefficient.
virtual ~FEDivKGradAssembler()
Destructor.
CepsMap< CepsUnknownIndex, SAFunc< CepsMathTensor > * > m_fctTensors
Diffusion coefficient.
FEDivKGradAssembler()
Default constructor (for virtual inheritance)
CepsVector< CepsMathTensor > getDiffusionTensorsForUnknowns(const CepsVector< Unknown * > &us, FEBase *elem, CepsReal3D x, CepsReal t) const
Returns tensors with the correct k tensor type. To be defined in child classes.
void setKForUnknown(Unknown *u, CepsMathScalar k)
Register the diffusion coefficient (x,t,...) for given unknown.
Holds all finite elements corresponding to each geometrical element.
A SAFunc is a ceps::Function that uses CepsStandardArgs as argument of call operator (),...
Definition: SAFunc.hpp:100
A class used to defined an unknown of a PDE problem The unknown can be defined on a specific region,...
Definition: Unknown.hpp:45