FEExtendedBidomainAssembler.hpp

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/*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   This file is part of CEPS.
 
   CEPS is free software: you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by
   the Free Software Foundation, either version 3 of the License, or
   (at your option) any later version.
 
   CEPS is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
   GNU General Public License for more details.
 
   You should have received a copy of the GNU General Public License
   along with CEPS (see file LICENSE at root of project).
   If not, see <https://www.gnu.org/licenses/>.
 
 
   Copyright 2019-2024 Inria, Universite de Bordeaux
 
   Authors, in alphabetical order:
 
     Pierre-Elliott BECUE, Florian CARO, Yves COUDIERE(*), Andjela DAVIDOVIC, 
     Charlie DOUANLA-LONTSI, Marc FUENTES, Mehdi JUHOOR, Michael LEGUEBE(*), 
     Pauline MIGERDITICHAN, Valentin PANNETIER(*), Nejib ZEMZEMI.
     * : currently active authors
 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~*/
#pragma once
 
#include "cardiac/common/FECardiacParameters.hpp"
#include "pde/assemblers/FE/FEHeatAssembler.hpp"
#include "cardiac/problem/ExtendedBidomainProblem.hpp"
 
class FEExtendedBidomainAssembler : public FEHeatAssembler, public FECardiacParameters
{ 
public:
  FEExtendedBidomainAssembler(ExtendedBidomainProblem* problem, FiniteElements* fe);
 
  ~FEExtendedBidomainAssembler() override = default;
 
protected:
  void
  computeBlocksOnElementAtQuadPoint(
    FEBase*                  element,
    CepsReal3D               xQ,
    CepsReal                 t,
    const CepsMathDynamic1D& phi,
    const CepsMathDynamic2D& gradPhi
  ) override;
 
protected:
  CepsBool
  isTissue(FEBase* element) const;
 
  CepsBool
  isExtracardiac(FEBase* element) const;
 
  CepsSet<CepsAttribute> m_tissueAttributes;        
  CepsSet<CepsAttribute> m_extracardiacAttributes;  
};