AbstractPacemakerSolver Class Reference

Detailed Description

Solves pacemaker bidomain problem with FBE, SBDF RK or CN schemes.

Definition at line 37 of file AbstractPacemakerSolver.hpp.

#include <AbstractPacemakerSolver.hpp>

Inheritance diagram for AbstractPacemakerSolver:

Public Member Functions
	AbstractPacemakerSolver (AbstractPacemakerProblem *pacemaker, InputParameters *p)
	Constructor from problem. More...
	~AbstractPacemakerSolver ()=default
	Destructor. More...
void	setupWithParameters (InputParameters *params)
	Set attributes from input file. Parameters are passed as arguments in case one wants to use other parameters. More...
AbstractPacemakerProblem *	getPacemakerProblem () const
	Converts own pointer to abstract pde problem to cardiac problem. More...

Protected Member Functions
CepsReal	getRequiredTimeStep (CepsReal t, CepsReal defTimeStep=1E12) const
	Get the required time step for this time (phase deduced from the time) More...
CepsReal	getPacemakerCurrent (DHVecPtr sol, AbstractDiscretization *disc, CepsReal time) const
	Compute the current pacemaker current I in uA. More...
CepsReal	getAlligatorVoltage (DHVecPtr sol, AbstractDiscretization *disc, CepsReal time) const
	Compute the alligator voltage in mV. More...
CepsReal	getMeanOnElectrodeOf (DHVecPtr sol, Unknown *u, FiniteElements *fe, ParallelRCElectrode *e) const
	Integrate the unknown u on the electrode e. More...

Protected Attributes
AbstractPacemakerProblem *	m_problem
	PacemakerProblem pointer. More...
CepsReal	m_phase
	Which phase of pulse delivery. More...
CepsReal	m_current
	Register for pacemaker current in uA. More...
CepsReal	m_Vcroco
	Register for measured voltage. More...
CepsReal	m_meanOfPotentialOnAnode
	Register for an integral value on anode. More...
CepsReal	m_meanOfPotentialOnCathode
	Register for an integral value on cathode. More...
CepsReal	m_pmkTimeStepOffset
	Time step for offset phase. More...
CepsReal	m_pmkTimeStepPulse
	Time step for pulse phase. More...
CepsReal	m_pmkTimeStepSwitch
	Time step for switch phase. More...
CepsReal	m_pmkTimeStepOcd
	Time step for ocd phase. More...
CepsReal	m_pmkTimeStepWait
	Time step for waiting phase. More...

Friends
class	TestPacemakerProblem

Constructor & Destructor Documentation

AbstractPacemakerSolver()

AbstractPacemakerSolver::AbstractPacemakerSolver	(	AbstractPacemakerProblem *	pacemaker,
		InputParameters *	p
	)

Constructor from problem.

Definition at line 36 of file AbstractPacemakerSolver.cpp.

~AbstractPacemakerSolver()

AbstractPacemakerSolver::~AbstractPacemakerSolver ( )

default

Destructor.

Member Function Documentation

getAlligatorVoltage()

CepsReal AbstractPacemakerSolver::getAlligatorVoltage ( DHVecPtr  sol, AbstractDiscretization *  disc, CepsReal  time  ) const

protected

Compute the alligator voltage in mV.

Parameters

sol	the vector of solution
disc	pointer to discretization
time	current time

Returns

Definition at line 113 of file AbstractPacemakerSolver.cpp.

getMeanOnElectrodeOf()

CepsReal AbstractPacemakerSolver::getMeanOnElectrodeOf ( DHVecPtr  sol, Unknown *  u, FiniteElements *  fe, ParallelRCElectrode *  e  ) const

protected

Integrate the unknown u on the electrode e.

Parameters

sol	the vector of solution
u	the unknown to integrate
fe	pointer to FiniteElements
e	the considered electrode

Returns

the integral value

Definition at line 130 of file AbstractPacemakerSolver.cpp.

getPacemakerCurrent()

CepsReal AbstractPacemakerSolver::getPacemakerCurrent ( DHVecPtr  sol, AbstractDiscretization *  disc, CepsReal  time  ) const

protected

Compute the current pacemaker current I in uA.

Parameters

sol	the vector of solution
disc	pointer to discretization
time	current time

Returns

Definition at line 91 of file AbstractPacemakerSolver.cpp.

getPacemakerProblem()

AbstractPacemakerProblem * AbstractPacemakerSolver::getPacemakerProblem

(

)

const

Converts own pointer to abstract pde problem to cardiac problem.

Definition at line 64 of file AbstractPacemakerSolver.cpp.

getRequiredTimeStep()

CepsReal AbstractPacemakerSolver::getRequiredTimeStep ( CepsReal  t, CepsReal  defTimeStep = 1E12  ) const

protected

Get the required time step for this time (phase deduced from the time)

Definition at line 70 of file AbstractPacemakerSolver.cpp.

setupWithParameters()

void AbstractPacemakerSolver::setupWithParameters

(

InputParameters *

params

)

Set attributes from input file. Parameters are passed as arguments in case one wants to use other parameters.

Definition at line 54 of file AbstractPacemakerSolver.cpp.

Friends And Related Function Documentation

TestPacemakerProblem

friend class TestPacemakerProblem

friend

Definition at line 57 of file AbstractPacemakerSolver.hpp.

Field Documentation

m_current

CepsReal AbstractPacemakerSolver::m_current

protected

Register for pacemaker current in uA.

Definition at line 109 of file AbstractPacemakerSolver.hpp.

m_meanOfPotentialOnAnode

CepsReal AbstractPacemakerSolver::m_meanOfPotentialOnAnode

protected

Register for an integral value on anode.

Definition at line 111 of file AbstractPacemakerSolver.hpp.

m_meanOfPotentialOnCathode

CepsReal AbstractPacemakerSolver::m_meanOfPotentialOnCathode

protected

Register for an integral value on cathode.

Definition at line 112 of file AbstractPacemakerSolver.hpp.

m_phase

CepsReal AbstractPacemakerSolver::m_phase

protected

Which phase of pulse delivery.

Definition at line 108 of file AbstractPacemakerSolver.hpp.

m_pmkTimeStepOcd

CepsReal AbstractPacemakerSolver::m_pmkTimeStepOcd

protected

Time step for ocd phase.

Definition at line 121 of file AbstractPacemakerSolver.hpp.

m_pmkTimeStepOffset

CepsReal AbstractPacemakerSolver::m_pmkTimeStepOffset

protected

Time step for offset phase.

Definition at line 115 of file AbstractPacemakerSolver.hpp.

m_pmkTimeStepPulse

CepsReal AbstractPacemakerSolver::m_pmkTimeStepPulse

protected

Time step for pulse phase.

Definition at line 117 of file AbstractPacemakerSolver.hpp.

m_pmkTimeStepSwitch

CepsReal AbstractPacemakerSolver::m_pmkTimeStepSwitch

protected

Time step for switch phase.

Definition at line 119 of file AbstractPacemakerSolver.hpp.

m_pmkTimeStepWait

CepsReal AbstractPacemakerSolver::m_pmkTimeStepWait

protected

Time step for waiting phase.

Definition at line 123 of file AbstractPacemakerSolver.hpp.

m_problem

AbstractPacemakerProblem* AbstractPacemakerSolver::m_problem

protected

PacemakerProblem pointer.

Definition at line 106 of file AbstractPacemakerSolver.hpp.

m_Vcroco

CepsReal AbstractPacemakerSolver::m_Vcroco

protected

Register for measured voltage.

Definition at line 110 of file AbstractPacemakerSolver.hpp.

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The documentation for this class was generated from the following files:

• /builds/xxjFYZX3/0/carmen/ceps/src/cardiac/pacemaker/solver/AbstractPacemakerSolver.hpp
• /builds/xxjFYZX3/0/carmen/ceps/src/cardiac/pacemaker/solver/AbstractPacemakerSolver.cpp