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CEPS
24.01
Cardiac ElectroPhysiology Simulator
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CEPS
24.01
Cardiac ElectroPhysiology Simulator
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Base class for nodes used in meshes.
On top of coordinates, attributes and indexing, there is information on whether the node is on boundary, and which are its neighbors. A node may have several attributes.
Definition at line 44 of file GeomNode.hpp.
#include <GeomNode.hpp>
Public Member Functions | |
| GeomNode (CepsReal x, CepsReal y, CepsReal z, CepsGlobalIndex gID, CepsAttribute *attrs=nullptr, CepsUInt nAttrs=0) | |
| Constructor. More... | |
| ~GeomNode () override=default | |
| Destructor. More... | |
| void | reset () |
| Wipes content. More... | |
| CepsVertex (const CepsReal &x=0.0, const CepsReal &y=0.0, const CepsReal &z=0.0) | |
| using CepsVertex constructors More... | |
| CepsVertex (const CepsReal3D &coor) | |
| using CepsVertex constructors More... | |
| CepsVertex (const CepsVertex &)=default | |
| using CepsVertex constructors More... | |
| CepsVertex (CepsVertex &&) noexcept=default | |
| using CepsVertex constructors More... | |
 Public Member Functions inherited from ceps::HoldsGlobalIndex | |
| HoldsGlobalIndex (const CepsGlobalIndex &gid) | |
| Constructor with ID. More... | |
| HoldsGlobalIndex ()=default | |
| Default constructor. More... | |
| HoldsGlobalIndex (const HoldsGlobalIndex &)=default | |
| Copy constructor. More... | |
| HoldsGlobalIndex (HoldsGlobalIndex &&) noexcept=default | |
| Copy constructor. More... | |
| virtual | ~HoldsGlobalIndex ()=default |
| Destructor. More... | |
| HoldsGlobalIndex & | operator= (const HoldsGlobalIndex &)=default |
| Assignment operator. More... | |
| HoldsGlobalIndex & | operator= (HoldsGlobalIndex &&) noexcept=default |
| Assignment operator. More... | |
| const CepsGlobalIndex & | getGlobalIndex () const |
| Get the index More... | |
| void | setGlobalIndex (const CepsGlobalIndex &gid) |
| Set the index. More... | |
| void | reset () |
| Set the index to 0u. More... | |
| Public Member Functions inherited from ceps::HoldsDimension | |
| HoldsDimension (const CepsUInt &dim) | |
| Constructor with dimension. More... | |
| HoldsDimension ()=default | |
| Default constructor. More... | |
| HoldsDimension (const HoldsDimension &)=default | |
| Constructor by copy. More... | |
| HoldsDimension (HoldsDimension &&) noexcept=default | |
| Constructor by copy. More... | |
| virtual | ~HoldsDimension ()=default |
| Destructor. More... | |
| HoldsDimension & | operator= (const HoldsDimension &)=default |
| Assignment operator. More... | |
| HoldsDimension & | operator= (HoldsDimension &&) noexcept=default |
| Assignment operator. More... | |
| const CepsUInt & | getDimension () const |
| Get the dimension of the object. More... | |
| void | setDimension (const CepsUInt &dim) |
| Set the dimension of the object. More... | |
| void | reset () |
| Set the dimension of the object to 0. More... | |
| Public Member Functions inherited from ceps::HoldsBoundary | |
| HoldsBoundary (const CepsBool &isBoundary) | |
| Constructor with given information. More... | |
| HoldsBoundary ()=default | |
| Default constructor. More... | |
| HoldsBoundary (const HoldsBoundary &)=default | |
| Copy constructor. More... | |
| HoldsBoundary (HoldsBoundary &&) noexcept=default | |
| Copy constructor. More... | |
| virtual | ~HoldsBoundary ()=default |
| Destructor. More... | |
| HoldsBoundary & | operator= (const HoldsBoundary &)=default |
| Assignment operator. More... | |
| HoldsBoundary & | operator= (HoldsBoundary &&) noexcept=default |
| Assignment operator. More... | |
| CepsBool | isBoundary () const |
| Tells if entity is on boundary or not. More... | |
| void | setOnBoundary (CepsBool value=true) |
| Sets the entity as being on boundary or not. More... | |
| void | reset () |
| Sets the entity as NOT being on boundary. More... | |
| Public Member Functions inherited from ceps::HoldsAttributes | |
| HoldsAttributes (const CepsSet< CepsAttribute > &attributes) | |
| Constructor with any number of attributes. More... | |
| HoldsAttributes (const CepsVector< CepsAttribute > &attributes) | |
| Constructor with any number of attributes. More... | |
| HoldsAttributes (CepsAttribute *attributes, const CepsUInt &n) | |
| Constructor with any number of attributes. More... | |
| HoldsAttributes ()=default | |
| Default constructor. More... | |
| HoldsAttributes (const HoldsAttributes &)=default | |
| Assignement operator. More... | |
| HoldsAttributes (HoldsAttributes &&) noexcept=default | |
| Copy constructor. More... | |
| virtual | ~HoldsAttributes ()=default |
| Destructor. More... | |
| HoldsAttributes & | operator= (const HoldsAttributes &)=default |
| Assignment operator. More... | |
| HoldsAttributes & | operator= (HoldsAttributes &&) noexcept=default |
| Assignment operator. More... | |
| CepsUInt | getNumberOfAttributes () const |
| Returns number of attributes of the entity. More... | |
| CepsSet< CepsAttribute > & | getAttributes () |
| Returns the attributes of the entity. More... | |
| const CepsSet< CepsAttribute > & | getAttributes () const |
| Returns the attributes of the entity, const version. More... | |
| void | setAttributes (const CepsVector< CepsAttribute > &attributes) |
| Sets the attributes of the entity. More... | |
| void | setAttributes (const CepsSet< CepsAttribute > &attributes) |
| Sets the attributes of the entity. More... | |
| void | setAttributes (const CepsAttribute *attributes, const CepsUInt &n) |
| Sets the attributes of the entity. More... | |
| template<class _It > | |
| void | setAttributes (_It first, _It last) |
| Sets the attributes of the entity. More... | |
| void | addAttribute (const CepsAttribute &name) |
| Adds an attribute to the entity. More... | |
| void | addAttributes (const CepsVector< CepsAttribute > &attributes) |
| Adds several attributes to the entity. More... | |
| void | addAttributes (const CepsSet< CepsAttribute > &attributes) |
| Adds several attributes to the entity. More... | |
| void | addAttributes (const CepsAttribute *attributes, const CepsUInt &n) |
| Adds several attributes to the entity. More... | |
| template<class _It > | |
| void | addAttributes (_It first, _It last) |
| Adds several attributes to the entity. More... | |
| void | removeAttribute (const CepsAttribute &name) |
| Removes an attribute from the entity. More... | |
| void | removeAttributes (const CepsSet< CepsAttribute > &attributes) |
| Removes several attributes from the entity. More... | |
| void | removeAttributes (const CepsVector< CepsAttribute > &attributes) |
| Removes several attributes from the entity. More... | |
| void | removeAttributes (const CepsAttribute *attributes, const CepsUInt &n) |
| Removes several attributes from the entity. More... | |
| template<class _It > | |
| void | removeAttributes (_It first, _It last) |
| Removes several attributes from the entity. More... | |
| void | clearAttributes () |
| Removes all attributes from the entity. More... | |
| CepsBool | hasAttribute (const CepsAttribute &name) const |
| Tells if the entity has the attribute in argument. More... | |
| CepsBool | hasAllAttributes (const CepsVector< CepsAttribute > &attributes) const |
| Tells if the entity has all the attributes in argument. More... | |
| CepsBool | hasAllAttributes (const CepsAttribute *attributes, const CepsUInt &n) const |
| Tells if the entity has all the attributes in argument. More... | |
| template<class _It > | |
| CepsBool | hasAllAttributes (_It first, _It last) const |
| Tells if the entity has all the attributes in argument. More... | |
| CepsBool | hasOneOfAttributes (const CepsSet< CepsAttribute > &attributes) const |
| Tells if the entity has one of the attributes in argument. More... | |
| CepsBool | hasOneOfAttributes (const CepsVector< CepsAttribute > &attributes) const |
| Tells if the entity has one of the attributes in argument. More... | |
| CepsBool | hasOneOfAttributes (const CepsAttribute *attributes, const CepsUInt &n) const |
| Tells if the entity has one of the attributes in argument. More... | |
| template<class _It > | |
| CepsBool | hasOneOfAttributes (_It first, _It last) const |
| Tells if the entity has one of the attributes in argument. More... | |
| CepsBool | hasUniversalAttribute () const |
| Detect if the current entity has the attribute universal. More... | |
| void | reset () |
| Equivalent to HoldsAttributes::clear() More... | |
| Public Member Functions inherited from ceps::HoldsProcIds | |
| HoldsProcIds (const CepsProcId &owner, const CepsVector< CepsProcId > &halosPid={}) | |
| Constructor with own CPU Id and Ids of neighboring CPUs. More... | |
| HoldsProcIds ()=default | |
| Default constructor. More... | |
| HoldsProcIds (const HoldsProcIds &)=default | |
| Copy constructor. More... | |
| HoldsProcIds (HoldsProcIds &&) noexcept=default | |
| Copy constructor. More... | |
| virtual | ~HoldsProcIds ()=default |
| Destructor. More... | |
| HoldsProcIds & | operator= (const HoldsProcIds &)=default |
| Assignment operator. More... | |
| HoldsProcIds & | operator= (HoldsProcIds &&) noexcept=default |
| Assignment operator. More... | |
| CepsBool | isShared () const |
| Tells if there are halo CPUs. More... | |
| void | setShared (CepsBool flag) |
| Tells if there are halo CPUs. More... | |
| void | setOwner (const CepsProcId &pid) |
| Set shared between several processes ? More... | |
| const CepsProcId & | getOwner () const |
| Get owner (processus id) of this entity. More... | |
| void | setAsHaloFor (const CepsProcId &pid) |
| Adds pid to the set of halo CPUs More... | |
| CepsBool | isHaloFor (const CepsProcId &pid) const |
| Detect if this entity is in the halo of. More... | |
| void | reset () |
| Gives ownership to rank(), removes halos. More... | |
| Public Member Functions inherited from ceps::HoldsNodes< GeomNode > | |
| HoldsNodes (const CepsVector< GeomNode * > &nodes) | |
| Constructor with nodes. More... | |
| HoldsNodes (GeomNode **nodes, const CepsUInt &n) | |
| Constructor with nodes. More... | |
| HoldsNodes ()=default | |
| Default constructor. More... | |
| HoldsNodes (const HoldsNodes &)=default | |
| Copy constructor. More... | |
| HoldsNodes (HoldsNodes &&) noexcept=default | |
| Copy constructor. More... | |
| virtual | ~HoldsNodes ()=default |
| Destructor. More... | |
| HoldsNodes & | operator= (const HoldsNodes &)=default |
| Assignment operator. More... | |
| HoldsNodes & | operator= (HoldsNodes &&) noexcept=default |
| Assignment operator. More... | |
| CepsUInt | getNumberOfNodes () const |
| Returns the total number of nodes. More... | |
| CepsUInt | countValidNodes () |
| Returns the number of nodes that are not nullptr. More... | |
| CepsVector< GeomNode * > & | getNodes () |
| Reference to the node pointers array. More... | |
| const CepsVector< GeomNode * > & | getNodes () const |
| Reference to the node pointers array, const version. More... | |
| GeomNode * | getNodeAt (const CepsUInt &i) |
| Pointer to the i-th node. More... | |
| const GeomNode * | getNodeAt (const CepsUInt &i) const |
| Pointer to the i-th node, const version. More... | |
| void | setNodes (const CepsVector< GeomNode * > &nodes) |
| Assign all nodes. More... | |
| void | setNodes (GeomNode **nodes, const CepsUInt &n) |
| Assign all nodes. More... | |
| void | setNodes (_It first, _It last) |
| Assign all nodes. More... | |
| void | setNodeAt (const CepsUInt &i, GeomNode *neigh) |
| Set the i-th node. If i>nNodes, nullptrs fill the vector. More... | |
| void | addNode (GeomNode *name) |
| Add a single node to the vector. More... | |
| void | addNodes (const CepsVector< GeomNode * > &nodes) |
| Add several nodes to the vector. More... | |
| void | addNodes (GeomNode **nodes, const CepsUInt &n) |
| Add several nodes to the vector. More... | |
| void | addNodes (_It first, _It last) |
| Add several nodes to the vector. More... | |
| void | removeNode (GeomNode *&name) |
| Removes the given node from the list. More... | |
| void | removeNodes (const CepsVector< GeomNode * > &nodes) |
| Removes several nodes from the list. More... | |
| void | removeNodes (GeomNode **nodes, const CepsUInt &n) |
| Removes several nodes from the list. More... | |
| void | removeNodes (_It first, _It last) |
| Removes several nodes from the list. More... | |
| void | clearNodes () |
| Wipes the vector of nodes. More... | |
| CepsBool | hasNode (GeomNode *&neigh) |
| Tells if object has the given node. More... | |
| CepsBool | hasAllNodes (const CepsVector< GeomNode * > &nodes) |
| Tells if object has all the given nodes. More... | |
| CepsBool | hasAllNodes (GeomNode **nodes, const CepsUInt &n) |
| Tells if object has all the given nodes. More... | |
| CepsBool | hasAllNodes (_It first, _It last) |
| Tells if object has all the given nodes. More... | |
| CepsBool | hasOneOfNodes (const CepsVector< GeomNode * > &nodes) |
| Tells if object has one of the given nodes. More... | |
| CepsBool | hasOneOfNodes (GeomNode **nodes, const CepsUInt &n) |
| Tells if object has one of the given nodes. More... | |
| CepsBool | hasOneOfNodes (_It first, _It last) |
| Tells if object has one of the given nodes. More... | |
| CepsVector< GeomNode * > | getValidNodes () const |
| Get pointers on all valid nodes. More... | |
| CepsGlobalIndex | getNodeIndex (CepsUInt i) const |
| Get the index of i-th node. More... | |
| CepsVector< CepsGlobalIndex > | getNodeIndices () const |
| Get indices of all nodes. More... | |
| void | getNodeIndices (CepsGlobalIndex *nodesIndices, const CepsSize &nAllocated) const |
| Get indices of all nodes. More... | |
| void | reset () |
| Equivalent to HoldsNodes::clearNodes. More... | |
| Public Member Functions inherited from ceps::HoldsCells< GeomCell > | |
| HoldsCells (const CepsVector< GeomCell * > &cells) | |
| Constructor with a vector of cells. More... | |
| HoldsCells (GeomCell **cells, const CepsUInt &n) | |
| Constructor with a vector of cells. More... | |
| HoldsCells ()=default | |
| Default constructor. More... | |
| HoldsCells (const HoldsCells &)=default | |
| Copy constructor. More... | |
| HoldsCells (HoldsCells &&) noexcept=default | |
| Copy constructor. More... | |
| virtual | ~HoldsCells ()=default |
| Destructor. More... | |
| HoldsCells & | operator= (const HoldsCells &)=default |
| Assignment operator. More... | |
| HoldsCells & | operator= (HoldsCells &&) noexcept=default |
| Assignment operator. More... | |
| CepsUInt | getNumberOfCells () const |
| Returns the number of cells in the object. More... | |
| CepsUInt | countValidCells () |
| Get the number of cells that are not nullptr. More... | |
| CepsVector< GeomCell * > | getValidCells () |
| Reference to the valid cells. More... | |
| CepsVector< GeomCell * > & | getCells () |
| Reference to the cells. More... | |
| const CepsVector< GeomCell * > & | getCells () const |
| Reference to the cells, const version. More... | |
| GeomCell *& | getCellAt (const CepsUInt &i) |
| Pointer to the i-th cell. More... | |
| const GeomCell *& | getCellAt (const CepsUInt &i) const |
| Pointer to the i-th cell , const version. More... | |
| void | setCells (const CepsVector< GeomCell * > &cells) |
| Replaces currently held cell pointers. More... | |
| void | setCells (GeomCell **cells, const CepsUInt &n) |
| Replaces currently held cell pointers. More... | |
| void | setCells (_It first, _It last) |
| Replaces currently held cell pointers. More... | |
| void | setCellAt (const CepsUInt &i, GeomCell *neigh) |
| Set a cell pointer in the vector of currently held cells, at given index. More... | |
| void | addCell (GeomCell *&name) |
| Adds a cell to the list. More... | |
| void | addCells (const CepsVector< GeomCell * > &cells) |
| Adds several cells to the list. More... | |
| void | addCells (GeomCell **cells, const CepsUInt &n) |
| Adds several cells to the list. More... | |
| void | addCells (_It first, _It last) |
| Adds several cells to the list. More... | |
| void | removeCell (GeomCell *&name) |
| Removes a given cell pointer from the list. More... | |
| void | removeCells (const CepsVector< GeomCell * > &cells) |
| Removes several cell pointers from the list. More... | |
| void | removeCells (GeomCell **cells, const CepsUInt &n) |
| Removes several cell pointers from the list. More... | |
| void | removeCells (_It first, _It last) |
| Removes several cell pointers from the list. More... | |
| void | clearCells () |
| Wipes the current list of cell pointers. More... | |
| CepsBool | hasCell (GeomCell *&neigh) |
| Tells if object has the cell given in argument. More... | |
| CepsBool | hasAllCells (const CepsVector< GeomCell * > &cells) |
| Tells if object has all cells given in argument. More... | |
| CepsBool | hasAllCells (GeomCell **cells, const CepsUInt &n) |
| Tells if object has all cells given in argument. More... | |
| CepsBool | hasAllCells (_It first, _It last) |
| Tells if object has all cells given in argument. More... | |
| CepsBool | hasOneOfCells (const CepsVector< GeomCell * > &cells) |
| Tells if object has one of the cells given in argument. More... | |
| CepsBool | hasOneOfCells (GeomCell **cells, const CepsUInt &n) |
| Tells if object has one of the cells given in argument. More... | |
| CepsBool | hasOneOfCells (_It first, _It last) |
| Tells if object has one of the cells given in argument. More... | |
| CepsIndex | getCellIndex (CepsUInt i) const |
| Get the index of i-th cell. More... | |
| CepsVector< CepsIndex > | getCellsIndices () const |
| Get indices of all cells. More... | |
| void | reset () |
| Equivalent to HoldsCells::clearCells. More... | |
| Public Member Functions inherited from CepsVertex | |
| CepsVertex (const CepsReal &x=0.0, const CepsReal &y=0.0, const CepsReal &z=0.0) | |
| Constructor with coordinates. More... | |
| CepsVertex (const CepsReal3D &coor) | |
| Constructor with coordinates. More... | |
| CepsVertex (const CepsVertex &)=default | |
| Copy constructor. More... | |
| CepsVertex (CepsVertex &&) noexcept=default | |
| Copy constructor. More... | |
| CepsVertex & | operator= (const CepsVertex &)=default |
| Assignment operator. More... | |
| CepsVertex & | operator= (CepsVertex &&) noexcept=default |
| Assignment operator. More... | |
| CepsVertex & | operator= (const CepsMathVertices &vec) |
| Assignment operator from Eigen format. More... | |
| CepsVertex & | operator= (const CepsReal3D &vec) |
| Assignment operator. More... | |
| virtual | ~CepsVertex ()=default |
| Destructor. More... | |
| operator CepsMathVertex () const | |
| Cast operator into CepsMathVertex. More... | |
| void | setX (const CepsReal &x) |
| Set vertex x coordinate. More... | |
| void | setY (const CepsReal &y) |
| Set vertex y coordinate. More... | |
| void | setZ (const CepsReal &z) |
| Set vertex z coordinate. More... | |
| void | setCoordinate (const CepsUInt &dim, const CepsReal &coor) |
| Set the three coordinates. More... | |
| void | setCoordinates (const CepsReal &x, const CepsReal &y=0., const CepsReal &z=0.) |
| Set the 3 coordinates at once. More... | |
| void | setCoordinates (const CepsReal3D &coor) |
| Set the three coordinates. More... | |
| void | setCoordinates (const CepsReal *coors, const CepsUInt &n) |
| Set the three coordinates. More... | |
| void | scale (const CepsReal &scaleFactor) |
| Scale all coordinates of this node. More... | |
| const CepsReal & | x () const |
| Vertex x coordinate. More... | |
| const CepsReal & | y () const |
| Vertex y coordinate. More... | |
| const CepsReal & | z () const |
| Vertex z coordinate. More... | |
| CepsReal & | getCoordinate (const CepsSize &dim) |
| Get coordinate of dimension 0 1 2, read & write. More... | |
| const CepsReal & | getCoordinate (const CepsSize &dim) const |
| Get coordinate of dimension 0 1 2, read only. More... | |
| CepsReal & | operator[] (const CepsUInt &dim) |
| Get coordinate of dimension 0 1 2, read & write. More... | |
| const CepsReal & | operator[] (const CepsUInt &dim) const |
| Get coordinate of dimension 0 1 2, read only. More... | |
| CepsReal3D & | getCoordinates () |
| Get three coordinates, read & write. More... | |
| const CepsReal3D & | getCoordinates () const |
| Get three coordinates, read only. More... | |
| CepsMathVertex | getCoordinatesForEigen () const |
| Get three coordinates. More... | |
| CepsBool | equals (const CepsVertex &vert, const CepsReal &errorFactor=1.0) |
| Check for coordinates equality. More... | |
| CepsReal | norm2 (const CepsSize &dim=3) const |
| Euclidian norm of coordinates. More... | |
| CepsReal | normp (const CepsInt &p, const CepsSize &dim=3) const |
| Norm p (for p =-1, 1, 2, etc) with p=-1 gives the inf norm. More... | |
| CepsReal | dot (const CepsVertex &other, const CepsSize &dim=3) const |
| Scalar product. dim restricts which components are used (1:(x), 2:(x,y), 3:(x,y,z)) More... | |
Additional Inherited Members | |
| Protected Member Functions inherited from ceps::HoldsNodes< GeomNode > | |
| void | errorOnNodeIndex (CepsUInt i, std::source_location loc=std::source_location::current()) const |
| Aborts if requesting node with wrong index. More... | |
| Protected Member Functions inherited from ceps::HoldsCells< GeomCell > | |
| void | errorOnCellIndex (CepsUInt i, const CepsString &funcName) const |
| Aborts if object holds less than i cells. More... | |
| Protected Attributes inherited from ceps::HoldsGlobalIndex | |
| CepsGlobalIndex | m_globalIndex |
| the index More... | |
| Protected Attributes inherited from ceps::HoldsAttributes | |
| CepsSet< CepsAttribute > | m_attributes |
| The attributes held by the entity. More... | |
| Protected Attributes inherited from ceps::HoldsNodes< GeomNode > | |
| CepsVector< GeomNode * > | m_nodes |
| The node pointers. More... | |
| GeomNode * | m_dummyNode |
| An empty node to be returned after abort when testing. More... | |
| Protected Attributes inherited from ceps::HoldsCells< GeomCell > | |
| CepsVector< GeomCell * > | m_cells |
| The cell pointers. More... | |
| GeomNode::GeomNode | ( | CepsReal | x, |
| CepsReal | y, | ||
| CepsReal | z, | ||
| CepsGlobalIndex | gID, | ||
| CepsAttribute * | attrs = nullptr, |
||
| CepsUInt | nAttrs = 0 |
||
| ) |
Constructor.
| x | coordinates |
| y | coordinates |
| z | coordinates |
| gID | global Index |
| attrs | attributes |
| nAttrs | number of attributes |
Definition at line 33 of file GeomNode.cpp.
|
overridedefault |
Destructor.
|
defaultnoexcept |
using CepsVertex constructors
| CepsVertex::CepsVertex |
using CepsVertex constructors
Definition at line 45 of file CepsVertex.cpp.
|
explicit |
using CepsVertex constructors
Definition at line 48 of file CepsVertex.cpp.
|
default |
using CepsVertex constructors
| void GeomNode::reset | ( | ) |
Wipes content.
Definition at line 49 of file GeomNode.cpp.
1.9.1