MonodomainProblem.cpp

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/*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   This file is part of CEPS.
 
   CEPS is free software: you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by
   the Free Software Foundation, either version 3 of the License, or
   (at your option) any later version.
 
   CEPS is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
   GNU General Public License for more details.
 
   You should have received a copy of the GNU General Public License
   along with CEPS (see file LICENSE at root of project).
   If not, see <https://www.gnu.org/licenses/>.
 
 
   Copyright 2019-2024 Inria, Universite de Bordeaux
 
   Authors, in alphabetical order:
 
     Pierre-Elliott BECUE, Florian CARO, Yves COUDIERE(*), Andjela DAVIDOVIC, 
     Charlie DOUANLA-LONTSI, Marc FUENTES, Mehdi JUHOOR, Michael LEGUEBE(*), 
     Pauline MIGERDITICHAN, Valentin PANNETIER(*), Nejib ZEMZEMI.
     * : currently active authors
 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~*/
#include "cardiac/problem/MonodomainProblem.hpp"
#include "cardiac/solver/MonodomainSolver.hpp"
 
MonodomainProblem::MonodomainProblem(Geometry* g, InputParameters* params)
  : CardiacProblem(g,params)
{
    setProblemName("Monodomain");
}
 
void
MonodomainProblem::defineUnknowns()
{
  addUnknown(UnknownsName::vm, m_tissueAttributes);
}
 
CepsVector<Unknown*>
MonodomainProblem::getTMVUnknowns() const
{
  return {getTMVUnknown()};
}
 
CepsVector<Unknown*>
MonodomainProblem::getCardiacUnknowns() const
{
  return getTMVUnknowns();
}
 
Unknown*
MonodomainProblem::getTMVUnknown() const
{
  return getUnknown(UnknownsName::vm);
}
 
void
MonodomainProblem::run()
{
  if (ceps::isProfiling()) 
    getProfiler()->start("whole","performing whole simulation (MonodomainProblem)");
 
  initializeEquation();
 
  MonodomainSolver solver(this);
  
  solver.solve(); 
 
  if (hasAnalyticSolution())
    m_errors = solver.getErrors();
 
  if (ceps::isProfiling())
    getProfiler()->stop("whole");  
 
}