File List

Here is a list of all files with brief descriptions:

[detail level 123456]

▼ doc
▼ pages
models
▼ src
▼ applications
AllProblems.hpp
ceps.cpp
cepsIonic.cpp
runConvergence.cpp
runConvergence.hpp
▼ cardiac
► assembler
► FE
FEBidomainAssembler.cpp
FEBidomainAssembler.hpp
FEBilayerMonodomainAssembler.cpp
FEBilayerMonodomainAssembler.hpp
FECardiacBCAssembler.cpp
FECardiacBCAssembler.hpp
FEExtendedBidomainAssembler.cpp
FEExtendedBidomainAssembler.hpp
FEMonodomainAssembler.cpp
FEMonodomainAssembler.hpp
FEMonodomainIntraAssembler.cpp
FEMonodomainIntraAssembler.hpp
► common
ActivationTracker.cpp
ActivationTracker.hpp
FECardiacParameters.cpp
FECardiacParameters.hpp
► pacemaker
► assembler
► FE
FEPacemakerAssembly.hpp
FEPacemakerBidomainAssembler.cpp
FEPacemakerBidomainAssembler.hpp
FEPacemakerPoissonAssembler.cpp
FEPacemakerPoissonAssembler.hpp
► problem
AbstractPacemakerProblem.cpp
AbstractPacemakerProblem.hpp
PacemakerBidomainProblem.cpp
PacemakerBidomainProblem.hpp
PacemakerPoissonProblem.cpp
PacemakerPoissonProblem.hpp
► solver
AbstractPacemakerSolver.cpp
AbstractPacemakerSolver.hpp
PacemakerBidomainSolver.cpp
PacemakerBidomainSolver.hpp
PacemakerPoissonSolver.cpp
PacemakerPoissonSolver.hpp
PacemakerPhase.hpp
► problem
BidomainProblem.cpp
BidomainProblem.hpp
BilayerMonodomainProblem.cpp
BilayerMonodomainProblem.hpp
CardiacProblem.cpp
CardiacProblem.hpp
CLMonodomainProblem.cpp
CLMonodomainProblem.hpp
ExtendedBidomainProblem.cpp
ExtendedBidomainProblem.hpp
MonodomainProblem.cpp
MonodomainProblem.hpp
► solver
BidomainSolver.cpp
BidomainSolver.hpp
BilayerMonodomainSolver.cpp
BilayerMonodomainSolver.hpp
CardiacSolver.cpp
CardiacSolver.hpp
ExtendedBidomainSolver.cpp
ExtendedBidomainSolver.hpp
MonodomainSolver.cpp
MonodomainSolver.hpp
▼ common
► abstract
CepsFunction.hpp
CepsObject.cpp
CepsObject.hpp
HoldsAttributes.cpp
HoldsAttributes.hpp
HoldsBoundary.cpp
HoldsBoundary.hpp
HoldsCells.hpp
HoldsCells.tpp
HoldsDimension.cpp
HoldsDimension.hpp
HoldsGeomObject.hpp
HoldsGeomObject.tpp
HoldsGlobalIndex.cpp
HoldsGlobalIndex.hpp
HoldsNodes.hpp
HoldsNodes.tpp
HoldsProcIds.cpp
HoldsProcIds.hpp
► containers
CepsArray.hpp
CepsContainerCommunication.cpp
CepsContainerCommunication.hpp
CepsMap.hpp
CepsVector.hpp
DistributedInfos.hpp
DistributedInfos.tpp
LocalGlobalMapping.hpp
LocalGlobalMapping.tpp
► core
CepsEnums.hpp
CepsException.cpp
CepsException.hpp
CepsFlags.cpp
CepsFlags.hpp
CepsIoMacros.hpp
CepsMathOperations.hpp
CepsMemory.hpp
CepsParallelTools.cpp
CepsParallelTools.hpp
CepsTypes.cpp
CepsTypes.hpp
CepsTypeTools.cpp
CepsTypeTools.hpp
Precision.hpp
► math
CepsContinuousFunctions.cpp
CepsContinuousFunctions.hpp
CepsPolynomial.hpp
CepsPolynomial.tpp
CepsVertex.cpp
CepsVertex.hpp
EigenTools.cpp
EigenTools.hpp	Small matrices manipulations (inversion, interleaving, more) Functions to help with small matrices inversion (and a few more)
► toolbox
CepsProfiler.cpp
CepsProfiler.hpp	Timer class, measure execution time
CepsString.cpp
CepsString.hpp
FileReader.cpp
FileReader.hpp
FileWriter.cpp
FileWriter.hpp
InputParameters.cpp
InputParameters.hpp
LagrangeInterpolator.cpp
LagrangeInterpolator.hpp
LeastSquares.cpp
LeastSquares.hpp
TimeIntegrator.cpp
TimeIntegrator.hpp
TimeStepper.cpp
TimeStepper.hpp
VariableTimeStepper.cpp
VariableTimeStepper.hpp
CepsCommon.hpp
CepsGlobalFixture.hpp
▼ geometry
► base
GeomCell.cpp
GeomCell.hpp
GeomCellJunction.cpp
GeomCellJunction.hpp
GeomNode.cpp
GeomNode.hpp
GeomSimplex.hpp
GeomSimplex.tpp
GeomSimplices.cpp
NodeCoupling.cpp
NodeCoupling.hpp
► partitioning
GeometryPartitioner.cpp
GeometryPartitioner.hpp
PartitioningMethod.hpp
PtscotchPartitioner.cpp
PtscotchPartitioner.hpp
► readers
CoupledNodesReader.cpp
CoupledNodesReader.hpp
GeometryReader.cpp
GeometryReader.hpp
GmshMeshReader.cpp
GmshMeshReader.hpp
MeditMeshReader.cpp
MeditMeshReader.hpp
MeshReader.cpp
MeshReader.hpp
TetgenMeshReader.cpp
TetgenMeshReader.hpp
VtkMeshReader.cpp
VtkMeshReader.hpp
► selectors
AbstractSelector.hpp
AbstractSelector.tpp
AttributesSelector.hpp
AttributesSelector.tpp
BoundarySelector.hpp
BoundarySelector.tpp
CustomSelector.hpp
CustomSelector.tpp
SphereSelector.hpp
SphereSelector.tpp
► writers
MeditGeometryWriter.cpp
MeditGeometryWriter.hpp
Geometry.cpp
Geometry.hpp
Mesh.cpp
Mesh.hpp
▼ linearAlgebra
DistributedHaloVector.cpp
DistributedHaloVector.hpp
DistributedMatrix.cpp
DistributedMatrix.hpp
DistributedVector.cpp
DistributedVector.hpp
LinearAlgebra.hpp
LinearSystem.cpp
LinearSystem.hpp
PETScKSP.cpp
PETScMatrix.cpp
PETScVector.cpp
SolverType.hpp
▼ ode
► ionicModels
AbstractIonicModel.cpp
AbstractIonicModel.hpp
AllIonicModels.cpp
AllIonicModels.hpp
AP95.cpp
AP95.hpp
BR77.cpp
BR77.hpp
CRN98.cpp
CRN98.hpp
MS03.cpp
MS03.hpp
ORdmD16.cpp
ORdmD16.hpp
TTP06.cpp
TTP06.hpp
► solver
AbstractOdeSolver.cpp
AbstractOdeSolver.hpp
AllOdeSolvers.hpp
ExpAdamsBashforth.cpp
ExpAdamsBashforth.hpp
FBEOdeSolver.cpp
FBEOdeSolver.hpp
IonicSolver.cpp
IonicSolver.hpp
RungeKutta.cpp
RungeKutta.hpp
RushLarsen.cpp
RushLarsen.hpp
SBDF.cpp
SBDF.hpp
▼ pde
► assemblers
► FE
FEAssembler.cpp
FEAssembler.hpp
FEDivKGradAssembler.cpp
FEDivKGradAssembler.hpp
FEDivKGradBCAssembler.cpp
FEDivKGradBCAssembler.hpp
FEHeatAssembler.cpp
FEHeatAssembler.hpp
FEIntegrator.hpp
FEIntegrator.tpp
FEMassAssembler.cpp
FEMassAssembler.hpp
FENullMeanConstraintAssembler.hpp
FENullMeanConstraintAssembler.tpp
AbstractAssembler.cpp
AbstractAssembler.hpp
► common
► electrodes
ElectrodeBase.cpp
ElectrodeBase.hpp
HoldsElectrodes.cpp
HoldsElectrodes.hpp
ParallelRCElectrode.cpp
ParallelRCElectrode.hpp
► functions
AllFunctors.hpp
ArraySAFunc.hpp
ArraySAFunc.tpp
BoundaryCondition.hpp
BoundaryCondition.tpp
BoundaryConditionManager.cpp
BoundaryConditionManager.hpp
CompactSupport.cpp
CompactSupport.hpp
ConstantSAFunc.hpp
ConstantSAFunc.tpp
Field.hpp
Field.tpp
FileInterpolatorSAFunc.cpp
FileInterpolatorSAFunc.hpp
FunctionDictionary.cpp
FunctionDictionary.hpp
InterpolationSAFunc.hpp
InterpolationSAFunc.tpp
PiecewiseSAFunc.hpp
PiecewiseSAFunc.tpp
SAFunc.cpp
SAFunc.hpp
SAFunc.tpp
SolVecSAFunc.cpp
SolVecSAFunc.hpp
SourceTerm.hpp
SourceTerm.tpp
SourceTermManager.cpp
SourceTermManager.hpp
► readers
CoeffReader.cpp
CoeffReader.hpp
► writers
MeditSolutionWriter.cpp
MeditSolutionWriter.hpp
TimeWriter.cpp
TimeWriter.hpp
VtkWriter.cpp
VtkWriter.hpp
AbstractDiscretization.cpp
AbstractDiscretization.hpp
ConvergenceStudy.hpp
ConvergenceStudy.tpp
DegreeOfFreedom.cpp
DegreeOfFreedom.hpp
DistributedFactory.cpp
DistributedFactory.hpp
PdeErrorCalculator.cpp
PdeErrorCalculator.hpp
Unknown.cpp
Unknown.hpp
► finiteElements
FEBase.cpp
FEBase.hpp
FENode.cpp
FENode.hpp
FEType.hpp
FiniteElements.cpp
FiniteElements.hpp
GaussianQuadrature.cpp
GaussianQuadrature.hpp
LagrangeBasisFunctions.cpp
LagrangeBasisFunctions.hpp
ReferenceFE.cpp
ReferenceFE.hpp
► problem
► static
AbstractStaticPdeProblem.cpp
AbstractStaticPdeProblem.hpp
DirichletAnodeCathodeProblem.cpp
DirichletAnodeCathodeProblem.hpp
FluxAnodeCathodeProblem.cpp
FluxAnodeCathodeProblem.hpp
LaplacianProblem.cpp
LaplacianProblem.hpp
► timed
AbstractTimedPdeProblem.cpp
AbstractTimedPdeProblem.hpp
HeatProblem.cpp
HeatProblem.hpp
AbstractPdeProblem.cpp
AbstractPdeProblem.hpp
► solver
► static
AbstractStaticPdeSolver.cpp
AbstractStaticPdeSolver.hpp
DirichletAnodeCathodeSolver.cpp
DirichletAnodeCathodeSolver.hpp
FEStaticSolver.cpp
FEStaticSolver.hpp
FluxAnodeCathodeSolver.cpp
FluxAnodeCathodeSolver.hpp
LaplacianSolver.cpp
LaplacianSolver.hpp
► timed
AbstractTimedPdeSolver.cpp
AbstractTimedPdeSolver.hpp
FETimedSolver.cpp
FETimedSolver.hpp
HeatSolver.cpp
HeatSolver.hpp
AbstractPdeSolver.cpp
AbstractPdeSolver.hpp